In my opinion, it depends.
Every collection point doesn't necessarily have a variant of fish that's different than another collection point. Someone has just given the two locations different names (for example, on the same river). Some fish are widely distributed and relatively homogeneous. Some are quite different from location to location.
I think that the Rio Blanco / Rio Copan Red Tiger Motaguense (or the various Hericthys carpintis variants from Veracruz, Mexico) are perfect examples of many names, same fish. I understand why they have different names...but at the end of the day, they're the same gene pool of fish.... and breeding them together is something that could occur in nature.
It also depends on what the purpose of breeding the fish is. If you're looking to create a fancy fish, then go ahead and mix whatever you want. Just realize (and label) that it is what it is.
If you seek to maintain as-authentic-as-possible populations of wild-type fish, you should only breed fish of similar populations/variants.
Matt